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Capability Brief — Technical Cut

The whole factory in one read: 8 engines · 8 intelligence agents · 1 disease program (TSC) on one platform. Every endpoint and status below is generated at build time from the capability registry — no hand-typed drift. For the human why, see the Mission Cut.

HCLS AI Factory architecture

Illustrative architecture diagram — teal engines, indigo agents, ember TSC.

The roster

Engines

Capability Domain Endpoint Status
Cardiology Engine clinical localhost:8126 live
Clinical Imaging Engine clinical localhost:8525 live
Genomics Foundations Engine genomics localhost:5000 live
Large-Molecule / Structural Biology Engine proteins localhost:8579 live
Precision Intelligence Engine clinical localhost:5001 live
Precision Oncology Engine clinical localhost:8526 live
Single-Cell Analysis Engine single_cell localhost:8573 verified
Therapeutic Discovery Engine small_molecules localhost:8505 live

Intelligence Agents

Capability Domain Endpoint Status
CAR-T Intelligence Agent clinical localhost:8521 live
Clinical Trial Intelligence Agent clinical localhost:8538 live
Neurology Intelligence Agent clinical localhost:8529 live
Pharmacogenomics Intelligence Agent clinical localhost:8507 live
Precision Autoimmune Intelligence Agent clinical localhost:8531 live
Precision Biomarker Intelligence Agent clinical localhost:8528 live
Rare Disease Intelligence Agent clinical localhost:8544 live
Single-Cell Intelligence Agent clinical localhost:8540 live

Models & NIMs

Capability Domain Endpoint Status
ADMET / Toxicity Prediction small_molecules localhost:8572 verified
Chai-1 Complex Structure Prediction proteins planned
Chai-2 De Novo Antibody / Binder Design proteins gated
DiffDock Docking small_molecules localhost:8002 live
ESM-2 LoRA Fine-Tuning proteins library planned
ESMFold Structure Prediction proteins localhost:8570 verified
GenMol Generator small_molecules planned
MolMIM Generator small_molecules localhost:8001 live
Molecule Generator (diversity) small_molecules localhost:8574 verified
Protein Developability + Design proteins localhost:8576 planned
Protein Sequence Search proteins localhost:8571 verified
ProteinMPNN Inverse Folding proteins localhost:8578 verified
pMHC-I Immunogenicity (MHCflurry) proteins localhost:8577 planned

Platform Services & Pipeline Stages

Capability Domain Endpoint Status
ACMG SF Secondary Findings genomics library verified
AI Workflow Composer platform live
Assistant Tool-Surface (MCP) platform live
Event Bus platform library live
GWAS Association Testing genomics library live
Local MLOps platform library live
Observability platform localhost:3000 live
Queryable Variant Store genomics localhost:8575 verified
Reproducibility Manifest platform library verified
VAF / Somatic-Mosaicism Flag genomics localhost:8575 planned
Vector Database platform localhost:19530 live
Verify Gate platform library live

Flagship disease program

Tuberous Sclerosis Complex composes the horizontals for one child in one governed afternoon — TSC1/TSC2 → mTORC1 → everolimus. Gene therapy is preclinical; everolimus is real and approved.

Honesty

All clinical output is decision support for a qualified clinician, never autonomous diagnosis. See the live Capability Maturity Matrix and the Honesty Ledger. A live capability is never mock-served.

Generated from the registry

This page's roster, endpoints, and statuses are generated from lib/hcls_common/capabilities.json at build time — the site cannot claim ahead of the code.